Variant report

Variant	rs12041641
Chromosome Location	chr1:184996891-184996892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184996571..184998477-chr1:185000710..185002993,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10429841	0.90[AMR][1000 genomes]
rs10489582	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10494582	1.00[EUR][1000 genomes]
rs11804954	1.00[EUR][1000 genomes]
rs12024255	1.00[EUR][1000 genomes]
rs12026308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12033761	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12037199	1.00[EUR][1000 genomes]
rs12038977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12045533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12240005	1.00[EUR][1000 genomes]
rs16823734	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16823739	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16823862	1.00[EUR][1000 genomes]
rs2025228	1.00[EUR][1000 genomes]
rs2144664	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34769115	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs41377350	1.00[EUR][1000 genomes]
rs57266144	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58685423	1.00[EUR][1000 genomes]
rs59611551	1.00[EUR][1000 genomes]
rs60064915	1.00[EUR][1000 genomes]
rs61146985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61379702	1.00[EUR][1000 genomes]
rs61537994	1.00[EUR][1000 genomes]
rs61573899	1.00[EUR][1000 genomes]
rs6698620	1.00[EUR][1000 genomes]
rs7516303	1.00[EUR][1000 genomes]
rs7540216	1.00[EUR][1000 genomes]
rs953701	1.00[EUR][1000 genomes]
rs953702	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv525731	chr1:184812165-185038104	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv522073	chr1:184986725-185013349	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184996000-184997000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr1:184996400-184997000	ZNF genes & repeats	Aorta	Aorta
3	chr1:184996600-184997000	Weak transcription	Brain Angular Gyrus	brain

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