Variant report

Variant	rs10798063
Chromosome Location	chr1:186843877-186843878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10798064	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10911939	1.00[ASN][1000 genomes]
rs10911941	1.00[ASN][1000 genomes]
rs10911947	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10911948	0.94[ASN][1000 genomes]
rs12567046	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12567822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16826045	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16826049	0.94[ASN][1000 genomes]
rs16826051	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186815200-186844800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:186835600-186844800	Weak transcription	NHEK	skin
3	chr1:186839200-186884800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:186839400-186844800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:186840400-186849200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:186841000-186853600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:186841000-186853800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:186841200-186846400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:186841600-186850200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:186841800-186846600	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:186841800-186850000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:186841800-186862400	Weak transcription	Hela-S3	cervix
13	chr1:186842600-186844200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:186842600-186845200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:186842800-186844200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:186843000-186846000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:186843000-186847600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:186843200-186844200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:186843200-186844800	Weak transcription	Osteobl	bone
20	chr1:186843200-186845000	Weak transcription	NHDF-Ad	bronchial
21	chr1:186843400-186844800	Weak transcription	Adipose Nuclei	Adipose
22	chr1:186843400-186845400	Weak transcription	Fetal Brain Male	brain
23	chr1:186843400-186846000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:186843400-186849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:186843400-186853800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:186843600-186844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:186843600-186844800	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:186843600-186845000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:186843800-186844200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:186843800-186844800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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