Variant report

Variant	rs16826049
Chromosome Location	chr1:186852641-186852642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10798063	0.94[ASN][1000 genomes]
rs10798064	0.94[ASN][1000 genomes]
rs10911939	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.94[ASN][1000 genomes]
rs10911941	0.94[ASN][1000 genomes]
rs10911947	1.00[ASN][1000 genomes]
rs10911948	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12567046	1.00[ASN][1000 genomes]
rs12567822	0.94[ASN][1000 genomes]
rs16826045	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16826051	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186839200-186884800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:186841000-186853600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:186841000-186853800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:186841800-186862400	Weak transcription	Hela-S3	cervix
5	chr1:186843400-186853800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:186845200-186856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:186848000-186856000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:186850600-186856400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:186850800-186853800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:186850800-186862200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr1:186850800-186863400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:186850800-186865400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:186851200-186856000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:186851600-186852800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:186851600-186856000	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:186852000-186857000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:186852400-186854000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:186852600-186852800	Enhancers	NHDF-Ad	bronchial
19	chr1:186852600-186854200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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