Variant report

Variant	rs1079936
Chromosome Location	chr6:118809688-118809689
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118807810..118810020-chr6:118811825..118813344,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1317073	0.83[AFR][1000 genomes]
rs1317735	0.80[AFR][1000 genomes]
rs17080137	0.80[AFR][1000 genomes]
rs17080148	0.85[AFR][1000 genomes]
rs17080257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080291	0.83[AFR][1000 genomes]
rs17080305	0.83[AFR][1000 genomes]
rs17080307	1.00[AFR][1000 genomes]
rs17080321	0.80[AFR][1000 genomes]
rs17080325	0.80[AFR][1000 genomes]
rs1998482	0.80[AFR][1000 genomes]
rs56689315	0.80[AFR][1000 genomes]
rs57969379	0.90[AFR][1000 genomes]
rs58727849	0.80[AFR][1000 genomes]
rs58824263	0.80[AFR][1000 genomes]
rs58917552	0.90[AFR][1000 genomes]
rs59510697	0.83[AFR][1000 genomes]
rs60752825	0.83[AFR][1000 genomes]
rs73520372	0.80[AFR][1000 genomes]
rs73520374	0.80[AFR][1000 genomes]
rs73522412	0.85[AFR][1000 genomes]
rs73522428	0.85[AFR][1000 genomes]
rs73522451	0.80[AFR][1000 genomes]
rs73522486	0.83[AFR][1000 genomes]
rs73522497	0.83[AFR][1000 genomes]
rs73524113	1.00[AFR][1000 genomes]
rs73524117	1.00[AFR][1000 genomes]
rs73524120	1.00[AFR][1000 genomes]
rs73524154	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526173	0.80[AFR][1000 genomes]
rs73526183	0.80[AFR][1000 genomes]
rs73526192	0.80[AFR][1000 genomes]
rs73528704	0.80[AFR][1000 genomes]
rs735920	0.80[AFR][1000 genomes]
rs997302	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv1020586	chr6:118711098-118900012	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
16	nsv432960	chr6:118723307-118826307	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv525179	chr6:118726243-118876092	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
18	nsv1019357	chr6:118731468-118860705	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv464027	chr6:118768150-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
20	nsv604557	chr6:118768150-118856822	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
21	nsv464029	chr6:118768150-118861263	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
22	nsv604558	chr6:118768150-118861263	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
23	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
25	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
27	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118784600-118827600	Weak transcription	Esophagus	oesophagus
2	chr6:118785000-118810000	Weak transcription	Spleen	Spleen
3	chr6:118785000-118813400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:118785000-118816600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:118788400-118809800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:118790200-118810600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:118790400-118816800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:118791000-118816400	Weak transcription	Pancreas	Pancrea
9	chr6:118791000-118816800	Weak transcription	HUVEC	blood vessel
10	chr6:118791000-118846000	Weak transcription	Gastric	stomach
11	chr6:118797800-118817000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:118800600-118816200	Weak transcription	HMEC	breast
13	chr6:118800800-118809800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:118806800-118810400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:118806800-118810600	Strong transcription	Primary T cells from cord blood	blood
16	chr6:118807000-118809800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:118807200-118809800	Strong transcription	Fetal Thymus	thymus
18	chr6:118807400-118809800	Weak transcription	Psoas Muscle	Psoas
19	chr6:118807400-118809800	Weak transcription	NHDF-Ad	bronchial
20	chr6:118807400-118812600	Strong transcription	HSMM	muscle
21	chr6:118807400-118842600	Weak transcription	NHLF	lung
22	chr6:118808000-118809800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:118808000-118809800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:118808000-118810200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:118808000-118811400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:118808000-118811400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:118808200-118809800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:118808200-118811800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr6:118808200-118813000	Strong transcription	Placenta	Placenta
30	chr6:118808200-118814200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:118808400-118810200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:118808400-118811400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr6:118808400-118811600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr6:118808400-118811600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:118808400-118811800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:118808400-118812400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:118808600-118810200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr6:118808600-118810400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
39	chr6:118808600-118810600	Strong transcription	Osteobl	bone
40	chr6:118808600-118811600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr6:118808600-118811600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:118808600-118811800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
43	chr6:118808800-118810200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
44	chr6:118808800-118810200	ZNF genes & repeats	Fetal Brain Female	brain
45	chr6:118808800-118810400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:118808800-118810400	ZNF genes & repeats	Fetal Stomach	stomach
47	chr6:118808800-118811200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
48	chr6:118808800-118811400	ZNF genes & repeats	Fetal Lung	lung
49	chr6:118808800-118811400	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr6:118808800-118811800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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