Variant report

Variant	rs17080321
Chromosome Location	chr6:118874656-118874657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118870709..118872352-chr6:118873999..118876158,2	K562	blood:
2	chr6:118628896..118631734-chr6:118872419..118875351,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10484289	1.00[YRI][hapmap]
rs1079936	0.80[AFR][1000 genomes]
rs1317073	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs1317735	1.00[AMR][1000 genomes]
rs17080137	1.00[AMR][1000 genomes]
rs17080148	1.00[AMR][1000 genomes]
rs17080257	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17080282	1.00[YRI][hapmap]
rs17080291	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17080304	0.80[YRI][hapmap]
rs17080305	1.00[AMR][1000 genomes]
rs17080307	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080419	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17080446	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs17080465	0.85[AFR][1000 genomes]
rs17080466	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs17080469	0.81[AFR][1000 genomes]
rs17080474	0.90[YRI][hapmap];0.91[AFR][1000 genomes]
rs1998482	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56689315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56959050	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57969379	1.00[AMR][1000 genomes]
rs58651965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58727849	1.00[AMR][1000 genomes]
rs58824263	1.00[AMR][1000 genomes]
rs59510697	1.00[AMR][1000 genomes]
rs60456335	0.90[AFR][1000 genomes]
rs60752825	1.00[AMR][1000 genomes]
rs60881635	1.00[AMR][1000 genomes]
rs61344747	0.90[AFR][1000 genomes]
rs73515223	0.91[AFR][1000 genomes]
rs73515228	0.86[AFR][1000 genomes]
rs73520372	1.00[AMR][1000 genomes]
rs73520374	1.00[AMR][1000 genomes]
rs73522409	1.00[AMR][1000 genomes]
rs73522412	1.00[AMR][1000 genomes]
rs73522428	1.00[AMR][1000 genomes]
rs73522451	1.00[AMR][1000 genomes]
rs73522486	1.00[AMR][1000 genomes]
rs73522497	1.00[AMR][1000 genomes]
rs73524113	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524117	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524120	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524155	0.80[AFR][1000 genomes]
rs73526173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526179	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73526195	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528703	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528730	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528784	0.90[AFR][1000 genomes]
rs73530804	0.90[AFR][1000 genomes]
rs735920	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs997302	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1020586	chr6:118711098-118900012	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv525179	chr6:118726243-118876092	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
16	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
18	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
19	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
20	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
21	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118844800-118875800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:118845200-118880000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:118846000-118875600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:118846200-118878600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:118847800-118895400	Weak transcription	Pancreas	Pancrea
6	chr6:118852600-118895200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:118859400-118880200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:118864400-118895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:118867000-118878800	Active TSS	Right Atrium	heart
10	chr6:118867800-118875200	Active TSS	Aorta	Aorta
11	chr6:118867800-118877200	Active TSS	Stomach Smooth Muscle	stomach
12	chr6:118868600-118875200	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:118868600-118894000	Weak transcription	Fetal Stomach	stomach
14	chr6:118869400-118880400	Active TSS	Right Ventricle	heart
15	chr6:118870600-118875400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:118871600-118875600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:118872200-118886600	Weak transcription	Fetal Kidney	kidney
18	chr6:118872200-118895200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:118872400-118878600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:118872400-118884000	Weak transcription	Brain Angular Gyrus	brain
21	chr6:118872400-118886200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:118872400-118886600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:118872600-118877400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:118872800-118878600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:118872800-118879000	ZNF genes & repeats	Fetal Heart	heart
26	chr6:118872800-118895200	Weak transcription	HMEC	breast
27	chr6:118873000-118875000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:118873000-118886400	Weak transcription	Adipose Nuclei	Adipose
29	chr6:118873200-118874800	Enhancers	Osteobl	bone
30	chr6:118873200-118875000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:118873200-118875000	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr6:118873200-118876600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:118873200-118886400	Weak transcription	Fetal Lung	lung
34	chr6:118873600-118875200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:118873600-118880400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:118873800-118875200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:118873800-118878000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:118873800-118880000	Weak transcription	NH-A	brain
39	chr6:118873800-118895600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:118874000-118874800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:118874000-118879000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:118874200-118875200	Weak transcription	Left Ventricle	heart
43	chr6:118874200-118875200	Weak transcription	Psoas Muscle	Psoas
44	chr6:118874200-118875200	Enhancers	HSMM	muscle
45	chr6:118874200-118880000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:118874400-118874800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr6:118874400-118875000	Enhancers	Dnd41	blood
48	chr6:118874400-118875200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr6:118874400-118876800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:118874600-118875200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links