Variant report

Variant	rs10800275
Chromosome Location	chr1:166857143-166857144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10800271	0.85[AMR][1000 genomes]
rs10800273	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11582566	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2837	0.85[EUR][1000 genomes]
rs6427038	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6688277	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6690192	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7532247	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7552562	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166853600-166857800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:166854000-166857200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:166854200-166857400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:166854200-166858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:166855000-166858000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:166855400-166860400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:166855600-166859600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:166856400-166857800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:166856600-166857800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:166856600-166862000	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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