Variant report
| Variant | rs6688277 |
|---|---|
| Chromosome Location | chr1:166863767-166863768 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000152382 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1053407 | 0.91[EUR][1000 genomes] |
| rs10800271 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10800273 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10800275 | 0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11582566 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2013526 | 0.90[EUR][1000 genomes] |
| rs2014854 | 0.91[EUR][1000 genomes] |
| rs2072741 | 0.81[EUR][1000 genomes] |
| rs2075982 | 0.81[EUR][1000 genomes] |
| rs2272793 | 0.80[ASN][1000 genomes] |
| rs2312238 | 0.91[EUR][1000 genomes] |
| rs2837 | 0.97[EUR][1000 genomes] |
| rs35622400 | 0.80[ASN][1000 genomes] |
| rs4657614 | 0.86[EUR][1000 genomes] |
| rs61408535 | 0.80[ASN][1000 genomes] |
| rs6427038 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6427046 | 0.90[EUR][1000 genomes] |
| rs6677387 | 0.80[ASN][1000 genomes] |
| rs6690192 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7531189 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7532247 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7552562 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6688277 | DUTP6 | cis | Artery Aorta | GTEx |
| rs6688277 | MAEL | cis | Nerve Tibial | GTEx |
| rs6688277 | MAEL | cis | Esophagus Muscularis | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
