Variant report

Variant	rs10800390
Chromosome Location	chr1:168856607-168856608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10753781	0.87[ASN][1000 genomes]
rs10800391	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800392	0.87[ASN][1000 genomes]
rs10800393	0.87[ASN][1000 genomes]
rs10919006	0.89[ASN][1000 genomes]
rs1322498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1322499	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407477	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1590285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34298853	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4656162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656163	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4656622	0.87[ASN][1000 genomes]
rs4656624	0.85[ASN][1000 genomes]
rs6427155	0.88[ASN][1000 genomes]
rs6666564	0.85[ASN][1000 genomes]
rs6683127	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6683236	0.88[ASN][1000 genomes]
rs7550083	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168847000-168858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:168850200-168857600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:168856200-168857600	Enhancers	Fetal Muscle Leg	muscle
4	chr1:168856400-168857000	Enhancers	Brain Germinal Matrix	brain
5	chr1:168856600-168857000	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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