Variant report

Variant	rs6683236
Chromosome Location	chr1:168856799-168856800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168855061..168857558-chr1:168869978..168872661,3	MCF-7	breast:
2	chr1:168850404..168853284-chr1:168854804..168857536,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10489364	0.80[EUR][1000 genomes]
rs10753780	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10753781	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10800390	0.88[ASN][1000 genomes]
rs10800391	0.88[ASN][1000 genomes]
rs10800392	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10800393	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10919006	0.99[ASN][1000 genomes]
rs10919011	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1322498	0.89[ASN][1000 genomes]
rs1322499	0.81[ASN][1000 genomes]
rs1407477	0.80[ASN][1000 genomes]
rs1575329	0.86[ASN][1000 genomes]
rs1590285	0.88[ASN][1000 genomes]
rs1885557	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2065129	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34298853	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36197047	0.83[ASN][1000 genomes]
rs4142003	0.80[EUR][1000 genomes]
rs4656162	0.86[ASN][1000 genomes]
rs4656163	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656622	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656624	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6427155	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657987	0.80[EUR][1000 genomes]
rs6666564	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6683127	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6683991	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6694810	0.86[ASN][1000 genomes]
rs6702913	0.86[ASN][1000 genomes]
rs715008	0.83[ASN][1000 genomes]
rs7525262	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7544924	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7550083	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs857633	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs857635	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168847000-168858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:168850200-168857600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:168856200-168857600	Enhancers	Fetal Muscle Leg	muscle
4	chr1:168856400-168857000	Enhancers	Brain Germinal Matrix	brain
5	chr1:168856600-168857000	Enhancers	Skeletal Muscle Male	skeletal muscle

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