Variant report

Variant	rs10919011
Chromosome Location	chr1:168865164-168865165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168863923..168866260-chr1:168880539..168883068,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1022789	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1028642	0.86[JPT][hapmap]
rs10489364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10753781	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10800392	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10800393	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10919006	0.85[ASN][1000 genomes]
rs10919013	0.90[JPT][hapmap]
rs1407477	0.85[CHD][hapmap]
rs1570335	0.87[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2065128	0.84[CEU][hapmap]
rs2065129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2146205	0.86[JPT][hapmap]
rs34298853	0.82[ASN][1000 genomes]
rs4142003	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4656163	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4656166	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4656622	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4656624	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6427155	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6427157	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6427159	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6657987	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6666564	0.81[ASN][1000 genomes]
rs6670083	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6670091	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6683127	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6683236	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6683991	0.91[CHB][hapmap];0.98[CHD][hapmap]
rs7514435	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7527859	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7544924	0.80[EUR][1000 genomes]
rs7550083	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7551577	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168861800-168865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:168862400-168877000	Weak transcription	Fetal Heart	heart
3	chr1:168863200-168867800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:168863200-168867800	Weak transcription	NHEK	skin
5	chr1:168863200-168868000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:168863200-168868400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:168865000-168865200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links