Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:168605162..168606714-chr1:168878547..168880681,2	K562	blood:
2	chr1:168875687..168879217-chr1:168890314..168893830,4	MCF-7	breast:
3	chr1:168874321..168876639-chr1:168878574..168880199,2	K562	blood:
4	chr1:168873646..168880836-chr1:169073615..169079308,19	MCF-7	breast:
5	chr1:168876521..168880322-chr1:168881956..168884576,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1022789	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1028642	0.89[ASN][1000 genomes]
rs10489364	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10800395	0.95[ASN][1000 genomes]
rs10919011	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10919013	0.82[ASN][1000 genomes]
rs1570335	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885558	0.86[ASN][1000 genomes]
rs2065129	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2146205	0.87[ASN][1000 genomes]
rs34408738	0.87[ASN][1000 genomes]
rs4142003	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4656166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6427157	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657987	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6670083	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6670091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72695643	0.86[ASN][1000 genomes]
rs7514435	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7527859	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168877200-168881400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:168877800-168883000	Weak transcription	Fetal Heart	heart
3	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
4	chr1:168878600-168879000	Weak transcription	Aorta	Aorta

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