Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:168881835..168884881-chr1:168885530..168888220,3	MCF-7	breast:
2	chr1:168881895..168884232-chr1:169078691..169080929,2	MCF-7	breast:
3	chr1:168863923..168866260-chr1:168880539..168883068,2	K562	blood:
4	chr1:168876521..168880322-chr1:168881956..168884576,3	MCF-7	breast:
5	chr1:168881969..168885467-chr1:168887830..168890604,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP1B1-4	chr1:168882033-168883104	NONHSAT007448

No data

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1022789	0.86[ASN][1000 genomes]
rs1028642	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10489364	0.90[JPT][hapmap]
rs10800395	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10919011	0.90[JPT][hapmap]
rs11577020	0.85[CEU][hapmap]
rs1407477	0.86[CHB][hapmap]
rs1570335	0.83[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1885558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2065129	0.90[JPT][hapmap]
rs2146204	0.85[CEU][hapmap]
rs2146205	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34408738	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4656166	0.84[ASN][1000 genomes]
rs6427157	0.82[ASN][1000 genomes]
rs6427159	0.82[ASN][1000 genomes]
rs6657987	0.86[JPT][hapmap]
rs6670083	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6670091	0.81[ASN][1000 genomes]
rs72695643	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7514435	0.82[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7527859	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168877800-168883000	Weak transcription	Fetal Heart	heart
2	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
3	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
4	chr1:168882000-168885600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:168882000-168886400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea

Quick Search: