Variant report

Variant	rs1022789
Chromosome Location	chr1:168886210-168886211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168884605..168887295-chr1:168929904..168931983,2	MCF-7	breast:
2	chr1:168881835..168884881-chr1:168885530..168888220,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1028642	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10489364	0.89[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10800393	0.83[CHB][hapmap]
rs10800395	0.99[ASN][1000 genomes]
rs10919011	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10919013	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1570335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1885558	0.89[ASN][1000 genomes]
rs2065129	0.89[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2146205	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs34408738	0.87[ASN][1000 genomes]
rs4142003	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4656166	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6427157	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6427159	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6657987	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6670083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6670091	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72695643	0.90[ASN][1000 genomes]
rs7514435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7527859	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7551577	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
2	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
3	chr1:168882000-168886400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea
5	chr1:168883400-168888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:168884000-168886400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:168884000-168886600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:168884000-168886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:168884000-168887200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:168884000-168888200	Weak transcription	Brain Germinal Matrix	brain
11	chr1:168884200-168887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:168884200-168887400	Weak transcription	Left Ventricle	heart
13	chr1:168884400-168886600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:168884400-168889800	Weak transcription	Psoas Muscle	Psoas
15	chr1:168885600-168888200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:168886200-168890600	Enhancers	HMEC	breast

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