Variant report

Variant	rs11577020
Chromosome Location	chr1:168862856-168862857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10919013	0.85[CEU][hapmap]
rs11586213	0.96[EUR][1000 genomes]
rs12033844	0.87[EUR][1000 genomes]
rs12124802	0.96[EUR][1000 genomes]
rs12139484	0.96[EUR][1000 genomes]
rs1322493	0.84[EUR][1000 genomes]
rs1322494	0.84[EUR][1000 genomes]
rs1322496	0.87[EUR][1000 genomes]
rs1540942	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17571933	0.84[EUR][1000 genomes]
rs2104191	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs2146205	0.85[CEU][hapmap]
rs2208748	0.84[EUR][1000 genomes]
rs2208749	0.84[EUR][1000 genomes]
rs59148528	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427156	1.00[CHB][hapmap]
rs72695642	0.96[EUR][1000 genomes]
rs973608	0.88[JPT][hapmap]
rs992055	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168861800-168865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:168862000-168863000	Enhancers	Colon Smooth Muscle	Colon
3	chr1:168862000-168863200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:168862000-168863200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:168862000-168863200	Enhancers	Fetal Stomach	stomach
6	chr1:168862000-168863200	Enhancers	Ovary	ovary
7	chr1:168862000-168863200	Enhancers	Stomach Smooth Muscle	stomach
8	chr1:168862000-168863200	Enhancers	HMEC	breast
9	chr1:168862000-168863200	Enhancers	HSMM	muscle
10	chr1:168862000-168863200	Enhancers	HSMMtube	muscle
11	chr1:168862000-168865000	Enhancers	Fetal Lung	lung
12	chr1:168862200-168863000	Enhancers	Brain Hippocampus Middle	brain
13	chr1:168862200-168863000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr1:168862200-168863200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:168862200-168863200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr1:168862400-168863000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:168862400-168863000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr1:168862400-168863200	Enhancers	Rectal Smooth Muscle	rectum
19	chr1:168862400-168863200	Enhancers	NHDF-Ad	bronchial
20	chr1:168862400-168877000	Weak transcription	Fetal Heart	heart
21	chr1:168862600-168863000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:168862600-168863000	Enhancers	Fetal Brain Male	brain
23	chr1:168862600-168863000	Enhancers	Fetal Muscle Leg	muscle
24	chr1:168862600-168864000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:168862800-168863000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:168862800-168863000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr1:168862800-168863000	Flanking Active TSS	NHEK	skin
28	chr1:168862800-168863200	Enhancers	Aorta	Aorta
29	chr1:168862800-168863600	Enhancers	Psoas Muscle	Psoas

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