Variant report

Variant	rs12124802
Chromosome Location	chr1:168854485-168854486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11577020	0.96[EUR][1000 genomes]
rs11586213	0.92[EUR][1000 genomes]
rs12033844	0.84[EUR][1000 genomes]
rs12139484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322493	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1322494	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1322496	0.84[EUR][1000 genomes]
rs1540942	0.92[EUR][1000 genomes]
rs17571933	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2104191	0.96[EUR][1000 genomes]
rs2146204	0.92[EUR][1000 genomes]
rs2208748	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2208749	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59148528	0.97[EUR][1000 genomes]
rs72695642	0.92[EUR][1000 genomes]
rs992055	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168847000-168858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:168850200-168857600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:168851800-168856400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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