Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10919013	0.81[CEU][hapmap]
rs11577020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11586213	0.96[EUR][1000 genomes]
rs12033844	0.87[EUR][1000 genomes]
rs12124802	0.96[EUR][1000 genomes]
rs12139484	0.96[EUR][1000 genomes]
rs1322493	0.84[EUR][1000 genomes]
rs1322494	0.84[EUR][1000 genomes]
rs1322496	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1540942	0.96[EUR][1000 genomes]
rs17571933	0.84[EUR][1000 genomes]
rs2146204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs2146205	0.82[CEU][hapmap]
rs2208748	0.84[EUR][1000 genomes]
rs2208749	0.84[EUR][1000 genomes]
rs59148528	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6427156	1.00[CHB][hapmap]
rs72695642	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs973608	0.88[JPT][hapmap]
rs992055	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168847000-168858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:168857000-168862000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:168857200-168862000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:168857600-168858200	ZNF genes & repeats	Brain Hippocampus Middle	brain

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