Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168884605..168887295-chr1:168929904..168931983,2	MCF-7	breast:
2	chr1:168881835..168884881-chr1:168885530..168888220,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10919013	0.84[CEU][hapmap]
rs11577020	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs12033844	0.84[EUR][1000 genomes]
rs12124802	0.92[EUR][1000 genomes]
rs12139484	0.92[EUR][1000 genomes]
rs1322493	0.80[EUR][1000 genomes]
rs1322494	0.80[EUR][1000 genomes]
rs1322496	0.84[EUR][1000 genomes]
rs1540942	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17571933	0.80[EUR][1000 genomes]
rs1819187	0.87[ASN][1000 genomes]
rs2065128	0.88[JPT][hapmap]
rs2104191	0.96[EUR][1000 genomes]
rs2146204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2146205	0.85[CEU][hapmap]
rs2208748	0.80[EUR][1000 genomes]
rs2208749	0.80[EUR][1000 genomes]
rs59148528	0.95[EUR][1000 genomes]
rs6427156	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6660196	0.92[ASN][1000 genomes]
rs72695642	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7551577	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs973608	1.00[JPT][hapmap]
rs992055	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
2	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
3	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea
4	chr1:168883400-168888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:168884000-168886600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:168884000-168886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:168884000-168887200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:168884000-168888200	Weak transcription	Brain Germinal Matrix	brain
9	chr1:168884200-168887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:168884200-168887400	Weak transcription	Left Ventricle	heart
11	chr1:168884400-168886600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:168884400-168889800	Weak transcription	Psoas Muscle	Psoas
13	chr1:168885600-168888200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:168886200-168890600	Enhancers	HMEC	breast
15	chr1:168886400-168888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:168886400-168889000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:168886400-168889400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:168886400-168889600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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