Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168805678..168808181-chr1:168833008..168834591,2	MCF-7	breast:
2	chr1:168827977..168831348-chr1:168831730..168835477,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10753780	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10753781	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10800392	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10800393	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10919006	0.86[ASN][1000 genomes]
rs1575329	0.99[ASN][1000 genomes]
rs1885557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34298853	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656163	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4656622	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4656624	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6427155	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666564	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6683127	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6683236	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6683991	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6694810	0.99[ASN][1000 genomes]
rs6702913	0.99[ASN][1000 genomes]
rs715008	0.98[ASN][1000 genomes]
rs7525262	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544924	0.85[EUR][1000 genomes]
rs7550083	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs857633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168829800-168833600	Enhancers	HepG2	liver
2	chr1:168831400-168837000	Weak transcription	Stomach Mucosa	stomach
3	chr1:168832200-168834000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:168832400-168833800	Enhancers	Adipose Nuclei	Adipose
5	chr1:168832600-168833800	Enhancers	Fetal Stomach	stomach
6	chr1:168832800-168833800	Enhancers	Colon Smooth Muscle	Colon
7	chr1:168832800-168833800	Enhancers	Fetal Lung	lung
8	chr1:168832800-168834200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:168832800-168834600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:168833000-168833600	Flanking Active TSS	A549	lung
11	chr1:168833200-168833800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:168833200-168834200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:168833400-168833800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:168833400-168833800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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