Variant report
| Variant | rs10800468 |
|---|---|
| Chromosome Location | chr1:169705411-169705412 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:169704931..169706505-chr1:169859799..169862220,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10489172 | 1.00[ASN][1000 genomes] |
| rs1062976 | 1.00[ASN][1000 genomes] |
| rs10919250 | 1.00[ASN][1000 genomes] |
| rs10919255 | 1.00[ASN][1000 genomes] |
| rs1131498 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11576078 | 1.00[ASN][1000 genomes] |
| rs11589247 | 1.00[ASN][1000 genomes] |
| rs12064636 | 1.00[ASN][1000 genomes] |
| rs12084893 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12089057 | 1.00[ASN][1000 genomes] |
| rs12760399 | 1.00[ASN][1000 genomes] |
| rs16862745 | 1.00[ASN][1000 genomes] |
| rs17525350 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17529513 | 1.00[ASN][1000 genomes] |
| rs17603022 | 1.00[ASN][1000 genomes] |
| rs4987280 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6678351 | 1.00[ASN][1000 genomes] |
| rs6694855 | 1.00[ASN][1000 genomes] |
| rs73026213 | 1.00[ASN][1000 genomes] |
| rs73026243 | 1.00[ASN][1000 genomes] |
| rs73026245 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532586 | chr1:169593222-169713184 | Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3451367 | chr1:169630075-169976964 | Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:169703800-169707800 | Weak transcription | HUVEC | blood vessel |
