Variant report

Variant	rs10919255
Chromosome Location	chr1:169816182-169816183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169815997..169818292-chr1:169837214..169839882,2	K562	blood:
2	chr1:169815223..169817412-chr1:169826417..169828144,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10489172	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800468	1.00[ASN][1000 genomes]
rs10919246	0.80[EUR][1000 genomes]
rs10919250	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919252	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10919256	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10919258	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10919259	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10919267	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1131498	1.00[ASN][1000 genomes]
rs11576078	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589247	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084893	1.00[ASN][1000 genomes]
rs12089057	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12405525	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12410352	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12742961	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12760399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862745	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17525350	1.00[ASN][1000 genomes]
rs17529513	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17603022	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205846	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2272918	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35296671	0.96[EUR][1000 genomes]
rs4987280	1.00[ASN][1000 genomes]
rs549002	0.82[AMR][1000 genomes]
rs6678351	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6694855	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67274208	0.94[AFR][1000 genomes]
rs73026213	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026223	0.86[AMR][1000 genomes]
rs73026243	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73026245	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1814601	chr1:169782006-169885186	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv1821503	chr1:169782006-169885186	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv1847722	chr1:169782006-169885186	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2757760	chr1:169782006-169885186	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2758976	chr1:169782006-169885186	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv428268	chr1:169782006-169885186	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1845220	chr1:169782006-169933886	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv872542	chr1:169802760-169844093	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169764800-169818200	Weak transcription	Esophagus	oesophagus
2	chr1:169764800-169818200	Weak transcription	Lung	lung
3	chr1:169764800-169823600	Weak transcription	Gastric	stomach
4	chr1:169765000-169821800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:169765200-169818800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:169765200-169820600	Weak transcription	Psoas Muscle	Psoas
7	chr1:169765200-169823400	Weak transcription	Right Ventricle	heart
8	chr1:169765400-169822600	Weak transcription	Colonic Mucosa	Colon
9	chr1:169765600-169818200	Weak transcription	NHLF	lung
10	chr1:169765800-169818400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:169786200-169862400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:169786600-169841400	Strong transcription	Dnd41	blood
13	chr1:169788600-169823600	Weak transcription	Pancreas	Pancrea
14	chr1:169789200-169818600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:169791200-169841200	Strong transcription	Fetal Thymus	thymus
16	chr1:169793800-169822600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:169794200-169818400	Weak transcription	NHEK	skin
18	chr1:169794800-169822000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:169797000-169818200	Weak transcription	Spleen	Spleen
20	chr1:169797600-169818200	Weak transcription	HSMMtube	muscle
21	chr1:169802200-169822600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:169802400-169821800	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:169802800-169819800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:169805400-169848800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:169806400-169820600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:169806600-169860000	Weak transcription	Stomach Mucosa	stomach
27	chr1:169807000-169816600	Weak transcription	NHDF-Ad	bronchial
28	chr1:169808200-169819800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:169808200-169822000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:169808200-169841200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:169808400-169818200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:169808400-169818400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr1:169808600-169821800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:169808600-169827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:169808800-169816200	Strong transcription	Adipose Nuclei	Adipose
36	chr1:169808800-169817800	Weak transcription	Fetal Brain Male	brain
37	chr1:169808800-169818200	Weak transcription	Brain Germinal Matrix	brain
38	chr1:169808800-169818200	Weak transcription	Small Intestine	intestine
39	chr1:169808800-169818600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:169808800-169823200	Weak transcription	Fetal Heart	heart
41	chr1:169809200-169817800	Weak transcription	Brain Hippocampus Middle	brain
42	chr1:169809200-169829400	Strong transcription	GM12878-XiMat	blood
43	chr1:169809200-169829600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:169809800-169816400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:169810000-169828000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:169810400-169841400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:169810600-169841200	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr1:169810800-169817800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr1:169810800-169817800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr1:169810800-169841000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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