Variant report

Variant	rs35296671
Chromosome Location	chr1:169758289-169758290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169751762..169754671-chr1:169756355..169758348,3	K562	blood:
2	chr1:169757678..169760547-chr22:21995645..21997471,2	K562	blood:
3	chr1:169755971..169761352-chr1:169761713..169764832,7	MCF-7	breast:
4	chr1:169758285..169760664-chr1:169861938..169863927,2	K562	blood:

Variant related genes	Relation type
ENSG00000000457	Chromatin interaction
ENSG00000000460	Chromatin interaction
ENSG00000171806	Chromatin interaction
ENSG00000128228	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10489171	0.92[ASN][1000 genomes]
rs10489172	0.92[EUR][1000 genomes]
rs1062976	0.92[EUR][1000 genomes]
rs10919246	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10919250	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10919255	0.96[EUR][1000 genomes]
rs10919267	0.82[EUR][1000 genomes]
rs11576078	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12024211	0.82[ASN][1000 genomes]
rs12024321	0.90[ASN][1000 genomes]
rs12025442	0.84[ASN][1000 genomes]
rs12025581	0.84[ASN][1000 genomes]
rs12025648	0.82[ASN][1000 genomes]
rs12028435	0.91[ASN][1000 genomes]
rs12029611	0.84[ASN][1000 genomes]
rs12031046	0.93[ASN][1000 genomes]
rs12038307	0.93[ASN][1000 genomes]
rs12042277	0.95[ASN][1000 genomes]
rs12044932	0.81[ASN][1000 genomes]
rs12046689	0.93[ASN][1000 genomes]
rs12047464	0.89[ASN][1000 genomes]
rs12064636	0.94[EUR][1000 genomes]
rs12089057	0.89[EUR][1000 genomes]
rs12239757	0.93[ASN][1000 genomes]
rs12760399	0.96[EUR][1000 genomes]
rs16828193	0.85[ASN][1000 genomes]
rs16862668	0.81[ASN][1000 genomes]
rs16862714	0.92[ASN][1000 genomes]
rs16862745	0.82[EUR][1000 genomes]
rs17529513	0.93[EUR][1000 genomes]
rs17603022	0.93[EUR][1000 genomes]
rs2272913	0.90[ASN][1000 genomes]
rs2272914	0.90[ASN][1000 genomes]
rs28477509	0.93[ASN][1000 genomes]
rs35372000	0.89[ASN][1000 genomes]
rs3766133	0.95[ASN][1000 genomes]
rs3766136	0.95[ASN][1000 genomes]
rs3766149	0.90[ASN][1000 genomes]
rs3766153	0.85[ASN][1000 genomes]
rs57868479	0.92[ASN][1000 genomes]
rs58583023	0.84[ASN][1000 genomes]
rs58910844	0.84[ASN][1000 genomes]
rs6694855	0.83[EUR][1000 genomes]
rs72637237	0.83[ASN][1000 genomes]
rs72637238	0.84[ASN][1000 genomes]
rs72637239	0.93[ASN][1000 genomes]
rs72637240	0.93[ASN][1000 genomes]
rs72637241	0.93[ASN][1000 genomes]
rs72637242	0.93[ASN][1000 genomes]
rs72637243	0.90[ASN][1000 genomes]
rs72637244	0.89[ASN][1000 genomes]
rs730083	0.86[ASN][1000 genomes]
rs73026213	0.85[EUR][1000 genomes]
rs9287096	0.92[ASN][1000 genomes]
rs9659149	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169749400-169761400	Weak transcription	Liver	Liver
2	chr1:169750800-169762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:169751600-169760200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:169751600-169762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:169752600-169760200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:169753600-169763000	Weak transcription	HMEC	breast
7	chr1:169754400-169760800	Weak transcription	Dnd41	blood
8	chr1:169755000-169760000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:169756400-169761000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:169756400-169762400	Weak transcription	Fetal Brain Male	brain
11	chr1:169756600-169762600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:169757000-169762400	Weak transcription	Fetal Thymus	thymus
13	chr1:169757200-169758400	Enhancers	HepG2	liver
14	chr1:169757400-169763000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:169757400-169763000	Weak transcription	Thymus	Thymus
16	chr1:169757400-169763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:169757600-169762200	Weak transcription	Fetal Intestine Small	intestine
18	chr1:169757600-169763000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:169757800-169760000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:169758000-169762800	Weak transcription	Primary B cells from cord blood	blood
21	chr1:169758200-169761200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:169758200-169763200	Weak transcription	Adipose Nuclei	Adipose
23	chr1:169758200-169763200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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