Variant report

Variant	rs12024211
Chromosome Location	chr1:169730046-169730047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10489171	0.81[ASN][1000 genomes]
rs10919223	0.93[AMR][1000 genomes]
rs12025244	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12025442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025581	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028435	0.81[ASN][1000 genomes]
rs12029611	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12029669	0.93[AMR][1000 genomes]
rs12031046	0.83[ASN][1000 genomes]
rs12037112	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12038016	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12038307	0.83[ASN][1000 genomes]
rs12042023	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12042277	0.85[ASN][1000 genomes]
rs12043338	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12044932	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12046689	0.83[ASN][1000 genomes]
rs12239757	0.83[ASN][1000 genomes]
rs16828193	0.97[ASN][1000 genomes]
rs16862668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16862714	0.81[ASN][1000 genomes]
rs2179172	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28477509	0.83[ASN][1000 genomes]
rs35296671	0.82[ASN][1000 genomes]
rs3766133	0.85[ASN][1000 genomes]
rs3766136	0.85[ASN][1000 genomes]
rs3917443	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57868479	0.81[ASN][1000 genomes]
rs58583023	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58910844	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72637235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72637237	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72637238	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72637239	0.83[ASN][1000 genomes]
rs72637240	0.83[ASN][1000 genomes]
rs72637241	0.83[ASN][1000 genomes]
rs72637242	0.83[ASN][1000 genomes]
rs9287096	0.81[ASN][1000 genomes]
rs9659149	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169728000-169732800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:169728400-169731800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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