Variant report

Variant	rs12044932
Chromosome Location	chr1:169711811-169711812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169705648..169707388-chr1:169710933..169712519,2	MCF-7	breast:
2	chr1:169709712..169712944-chr1:169715789..169719606,5	MCF-7	breast:
3	chr1:169707608..169709249-chr1:169711620..169714505,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10919223	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12024211	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025244	0.85[ASN][1000 genomes]
rs12025442	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12025581	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12025648	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12029611	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029669	0.81[AMR][1000 genomes]
rs12031046	0.81[ASN][1000 genomes]
rs12037112	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12038016	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12038307	0.81[ASN][1000 genomes]
rs12042023	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12042277	0.83[ASN][1000 genomes]
rs12043338	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12046689	0.81[ASN][1000 genomes]
rs12239757	0.81[ASN][1000 genomes]
rs16828193	0.95[ASN][1000 genomes]
rs16862668	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179172	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28477509	0.81[ASN][1000 genomes]
rs35296671	0.81[ASN][1000 genomes]
rs3766133	0.83[ASN][1000 genomes]
rs3766136	0.83[ASN][1000 genomes]
rs3917443	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58583023	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58910844	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637234	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72637235	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637237	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72637238	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72637239	0.81[ASN][1000 genomes]
rs72637240	0.81[ASN][1000 genomes]
rs72637241	0.81[ASN][1000 genomes]
rs72637242	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169708800-169713800	Weak transcription	Left Ventricle	heart
2	chr1:169710400-169713800	Weak transcription	HUVEC	blood vessel
3	chr1:169710600-169713800	Weak transcription	Liver	Liver
4	chr1:169711000-169714200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:169711000-169714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:169711000-169714200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:169711000-169714600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:169711200-169714600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:169711200-169714600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:169711400-169714400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:169711600-169713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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