Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10919223	1.00[AMR][1000 genomes]
rs12024211	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12025442	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12025581	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12025648	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12029611	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12029669	1.00[AMR][1000 genomes]
rs12038016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12042023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12043338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12044932	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16828193	0.86[ASN][1000 genomes]
rs16862668	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2179172	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3917443	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4987272	1.00[AFR][1000 genomes]
rs58583023	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58910844	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72637234	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72637235	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72637237	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72637238	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872541	chr1:169672360-169695815	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169681200-169692000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:169681400-169691200	Weak transcription	Liver	Liver
3	chr1:169681600-169684800	Weak transcription	Dnd41	blood

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