Variant report

Variant	rs72637238
Chromosome Location	chr1:169740257-169740258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169734204..169737079-chr1:169739015..169740772,2	K562	blood:
2	chr1:169733934..169735704-chr1:169737869..169740772,2	K562	blood:
3	chr1:169738855..169740454-chr1:169761742..169763292,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10489171	0.83[ASN][1000 genomes]
rs10919223	0.93[AMR][1000 genomes]
rs12024211	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12024321	0.81[ASN][1000 genomes]
rs12025244	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12025442	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12025581	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12025648	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12028435	0.82[ASN][1000 genomes]
rs12029611	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12029669	0.93[AMR][1000 genomes]
rs12031046	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12037112	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12038016	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12038307	0.85[ASN][1000 genomes]
rs12042023	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12042277	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12043338	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12044932	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12046689	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12047464	0.81[ASN][1000 genomes]
rs12239757	0.85[ASN][1000 genomes]
rs16828193	0.99[ASN][1000 genomes]
rs16862668	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16862714	0.83[ASN][1000 genomes]
rs2179172	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2272913	0.81[ASN][1000 genomes]
rs2272914	0.81[ASN][1000 genomes]
rs28477509	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35296671	0.84[ASN][1000 genomes]
rs35372000	0.81[ASN][1000 genomes]
rs3766133	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3766136	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3766149	0.81[ASN][1000 genomes]
rs3917443	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57868479	0.83[ASN][1000 genomes]
rs58583023	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58910844	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72637234	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72637235	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72637237	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72637239	0.85[ASN][1000 genomes]
rs72637240	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72637241	0.85[ASN][1000 genomes]
rs72637242	0.85[ASN][1000 genomes]
rs72637243	0.81[ASN][1000 genomes]
rs72637244	0.81[ASN][1000 genomes]
rs730083	0.89[AFR][1000 genomes]
rs9287096	0.83[ASN][1000 genomes]
rs9659149	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169735400-169749000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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