Variant report

Variant	rs12025244
Chromosome Location	chr1:169737377-169737378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169737043..169739732-chr1:169761259..169763805,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489171	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs10919229	0.87[CHB][hapmap]
rs12024211	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12025442	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12025581	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12025648	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12029611	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12031046	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs12042023	0.81[ASN][1000 genomes]
rs12043338	0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12044932	0.85[ASN][1000 genomes]
rs12046689	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12047464	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs12047936	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs12239757	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs16828193	0.93[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs16862668	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16862714	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs2179172	0.93[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2272913	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3766136	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3766149	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs3766153	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs58583023	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58910844	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72637234	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637235	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637237	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72637238	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9659149	0.87[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169735400-169749000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:169737200-169737600	Enhancers	Liver	Liver

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