Variant report
| Variant | rs10919229 |
|---|---|
| Chromosome Location | chr1:169705127-169705128 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:169704931..169706505-chr1:169859799..169862220,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SELE | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10489171 | 0.86[CHB][hapmap] |
| rs10919246 | 0.81[CHB][hapmap];0.83[JPT][hapmap] |
| rs12025244 | 0.87[CHB][hapmap] |
| rs12031046 | 0.86[CHB][hapmap] |
| rs12043338 | 0.93[CHB][hapmap] |
| rs12046689 | 0.93[CHB][hapmap] |
| rs12047464 | 0.87[CHB][hapmap] |
| rs12047936 | 0.87[CHB][hapmap] |
| rs12239757 | 0.87[CHB][hapmap] |
| rs16828193 | 0.93[CHB][hapmap] |
| rs16862714 | 0.86[CHB][hapmap] |
| rs2179172 | 0.93[CHB][hapmap] |
| rs2272913 | 0.86[CHB][hapmap] |
| rs3766136 | 0.86[CHB][hapmap] |
| rs3766149 | 0.87[CHB][hapmap] |
| rs3766153 | 0.86[CHB][hapmap] |
| rs9659149 | 0.86[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532586 | chr1:169593222-169713184 | Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3451367 | chr1:169630075-169976964 | Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:169703800-169707800 | Weak transcription | HUVEC | blood vessel |
