Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10494756	0.81[ASN][1000 genomes]
rs10922231	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10922236	0.83[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10922260	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1135810	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs12026564	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12042609	0.96[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs1337166	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1345529	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923759	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2111930	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2287537	0.83[ASN][1000 genomes]
rs4026514	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4147323	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs4274099	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4418639	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4604725	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs61829439	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534863	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs927510	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9658810	0.82[EUR][1000 genomes]
rs9787082	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197456200-197457400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr1:197456400-197457000	ZNF genes & repeats	Brain Germinal Matrix	brain

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