Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197396850..197398688-chr1:197401350..197403753,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10922221	0.86[YRI][hapmap]
rs10922231	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10922236	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs10922260	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1135810	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12026564	0.80[AMR][1000 genomes]
rs12042609	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1337166	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1345529	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1923759	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2111930	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs4026514	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4147323	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs4274099	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs4418639	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4604725	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4915545	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs927510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9787082	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs993487	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197388800-197407000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:197388800-197407000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:197389600-197405800	Weak transcription	Brain Germinal Matrix	brain
4	chr1:197391600-197398400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:197397800-197398800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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