Variant report

Variant	rs4915545
Chromosome Location	chr1:197412029-197412030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197411700..197415475-chr1:197416632..197421884,5	K562	blood:
2	chr1:197406975..197410030-chr1:197411436..197415376,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10922231	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337166	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1923759	0.88[ASN][1000 genomes]
rs4418639	0.90[ASN][1000 genomes]
rs4604725	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7534863	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs927510	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787082	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993487	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197403800-197413000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:197404200-197412600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:197406000-197412200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:197407600-197414200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:197407800-197413800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:197408400-197412200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:197409400-197412400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:197409600-197412200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:197409800-197414000	Weak transcription	Brain Anterior Caudate	brain
10	chr1:197410200-197414000	Weak transcription	Ovary	ovary
11	chr1:197410200-197417000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:197410800-197412200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:197411000-197412200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:197411400-197414000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:197411600-197412200	Enhancers	Hela-S3	cervix
16	chr1:197411600-197412600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:197411800-197412200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr1:197411800-197412200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:197411800-197432000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:197412000-197413600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:197412000-197433200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links