Variant report

Variant	rs10803485
Chromosome Location	chr2:142309486-142309487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142308972..142312076-chr2:142313360..142316898,3	K562	blood:
2	chr2:142303735..142305902-chr2:142307985..142310549,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10182090	0.81[AFR][1000 genomes]
rs11680517	0.81[AFR][1000 genomes]
rs12993511	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13397685	0.82[AFR][1000 genomes]
rs1384661	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1384662	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483137	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1483139	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1483140	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1483146	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483147	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483148	0.81[AFR][1000 genomes]
rs1483149	0.81[AFR][1000 genomes]
rs17551988	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17617302	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17617659	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2009574	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34185323	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580805	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34898402	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35714902	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35780951	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36031377	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4611596	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62169796	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6429906	0.95[ASN][1000 genomes]
rs6429907	0.95[ASN][1000 genomes]
rs6747911	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs713263	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71417147	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7608026	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764820	0.95[ASN][1000 genomes]
rs979080	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9967805	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3412600	chr2:142306382-142310180	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142306200-142312200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:142306400-142312200	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links