Variant report
Variant | rs34580805 |
---|---|
Chromosome Location | chr2:142311838-142311839 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:142308972..142312076-chr2:142313360..142316898,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10803485 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12993511 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1384661 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1384662 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1483137 | 0.85[EUR][1000 genomes] |
rs1483139 | 0.85[EUR][1000 genomes] |
rs1483140 | 0.84[EUR][1000 genomes] |
rs1483146 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1483147 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs17551988 | 0.86[EUR][1000 genomes] |
rs17617302 | 0.87[EUR][1000 genomes] |
rs17617659 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2009574 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34185323 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34898402 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs35714902 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs35780951 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs36031377 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4611596 | 0.85[EUR][1000 genomes] |
rs62169796 | 0.90[EUR][1000 genomes] |
rs6429906 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6429907 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6747911 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs713263 | 0.84[EUR][1000 genomes] |
rs71417147 | 0.84[EUR][1000 genomes] |
rs7608026 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs764820 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs979080 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9967805 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv583203 | chr2:142055133-142378975 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv875240 | chr2:142199421-142347455 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
3 | nsv834393 | chr2:142256714-142431564 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
4 | nsv459640 | chr2:142291211-142345574 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
5 | nsv583213 | chr2:142291211-142345574 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
6 | nsv583214 | chr2:142299923-142458316 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
7 | esv3422340 | chr2:142310307-142312855 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
8 | esv3328447 | chr2:142310532-142312980 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
9 | esv3421524 | chr2:142310932-142312680 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:142306200-142312200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
2 | chr2:142306400-142312200 | Weak transcription | Brain Substantia Nigra | brain |