Variant report

Variant	rs10803737
Chromosome Location	chr2:11608834-11608835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:11608817-11608867	Caco-2	colon:	n/a
2	chr2:11608817-11608867	ovcar-3	ovarian:	n/a
3	chr2:11608817-11608867	ProgFib	skin:	n/a
4	chr2:11608817-11608867	AG04449	skin:	fetal
5	chr2:11608817-11608867	SKMC	muscle:	n/a
6	chr2:11608817-11608867	HEK293	kidney:	embryo
7	chr2:11608817-11608867	Hela-S3	cervix:	n/a
8	chr2:11608817-11608867	HNPCEpiC	eye:	n/a
9	chr2:11608817-11608867	HCPEpiC	choroid plexus:	n/a
10	chr2:11608817-11608867	U87	brain:	n/a
11	chr2:11608817-11608867	AG09319	gingival:	n/a
12	chr2:11608817-11608867	AoSMC	blood vessel:	n/a
13	chr2:11608817-11608867	HRE	kidney:	n/a
14	chr2:11608817-11608867	HCF	heart:	n/a
15	chr2:11608817-11608867	CMK	blood:	n/a
16	chr2:11608817-11608867	NH-A	brain:	n/a
17	chr2:11608817-11608867	IMR90	lung:	fetal
18	chr2:11608817-11608867	GM06990	blood:	n/a
19	chr2:11608817-11608867	HMEC	breast:	n/a
20	chr2:11608817-11608867	NT2-D1	testis:	n/a
21	chr2:11608817-11608867	H1-hESC	embryonic stem cell:	embryo
22	chr2:11608817-11608867	GM12891	blood:	n/a
23	chr2:11608817-11608867	MCF10A-Er-Src	breast:	n/a
24	chr2:11608817-11608867	PrEC	prostate:	n/a
25	chr2:11608817-11608867	Hepatocyte	liver:	n/a
26	chr2:11608817-11608867	SAEC	small airway:	n/a
27	chr2:11608817-11608867	HCM	heart:	n/a
28	chr2:11608817-11608867	SK-N-SH_RA	brain:	n/a
29	chr2:11608817-11608867	NHBE	bronchial:	n/a
30	chr2:11608817-11608867	SK-N-MC	brain:	n/a
31	chr2:11608817-11608867	HEEpiC	esophagus:	n/a
32	chr2:11608817-11608867	HepG2	liver:	n/a
33	chr2:11608817-11608867	HPAEpiC	pulmonary alveolar:	n/a
34	chr2:11608817-11608867	MCF-7	breast:	n/a
35	chr2:11608817-11608867	SK-N-SH	brain:	n/a
36	chr2:11608817-11608867	PANC-1	pancreas:	n/a
37	chr2:11608817-11608867	NHDF-neo	bronchial:	n/a
38	chr2:11608817-11608867	HRCEpiC	kidney:	n/a
39	chr2:11608817-11608867	BJ	skin:	n/a
40	chr2:11608817-11608867	HUVEC	blood vessel:	n/a
41	chr2:11608817-11608867	GM12878	blood:	n/a
42	chr2:11608817-11608867	RPTEC	kidney:	n/a
43	chr2:11608817-11608867	AG10803	skin:	n/a
44	chr2:11608817-11608867	Jurkat	blood:	n/a
45	chr2:11608817-11608867	PFSK-1	brain:	n/a
46	chr2:11608817-11608867	HRPEpiC	eye:	n/a
47	chr2:11608817-11608867	HIPEpiC	eye:	n/a
48	chr2:11608817-11608867	HL-60	blood:	n/a
49	chr2:11608817-11608867	HAEpiC	amniotic membrane:	n/a
50	chr2:11608817-11608867	T-47D	breast:	n/a

No data

Variant related genes	Relation type
E2F6	CpG island

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10192676	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10929741	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10929745	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10929746	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10929747	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10929748	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10929749	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11685543	0.84[ASN][1000 genomes]
rs12988106	0.83[ASN][1000 genomes]
rs13028340	0.93[EUR][1000 genomes]
rs1369500	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1369501	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1369502	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1369503	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34075853	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35047869	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35160324	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35606161	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35734540	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35818376	0.84[ASN][1000 genomes]
rs35973068	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4491705	0.88[ASN][1000 genomes]
rs60323348	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60819231	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6432195	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6432197	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6432198	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6432201	0.91[EUR][1000 genomes]
rs6705284	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6714698	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6719876	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6724082	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6724463	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6753836	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7565965	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7577942	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11607000-11621200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11607200-11611600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:11607200-11622400	Weak transcription	Spleen	Spleen
4	chr2:11607400-11612000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:11607400-11612000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:11607600-11609800	Weak transcription	HepG2	liver
7	chr2:11607600-11611400	Weak transcription	Dnd41	blood
8	chr2:11607600-11618000	Weak transcription	Primary T cells from cord blood	blood

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