Variant report

Variant	rs10804370
Chromosome Location	chr2:231501157-231501158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10804368	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804369	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933350	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933351	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681711	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692822	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470214	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546666	0.90[EUR][1000 genomes]
rs4972966	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972967	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991529	1.00[ASN][1000 genomes]
rs72991531	1.00[ASN][1000 genomes]
rs9917147	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527319	chr2:231492816-231501467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231500600-231501400	Enhancers	GM12878-XiMat	blood
2	chr2:231500600-231502200	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:231500600-231502200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:231500800-231507000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:231501000-231502000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:231501000-231502200	Enhancers	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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