Variant report

Variant	rs11692822
Chromosome Location	chr2:231502213-231502214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10804368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804370	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11681711	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546666	0.82[EUR][1000 genomes]
rs4972966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991529	1.00[ASN][1000 genomes]
rs72991531	1.00[ASN][1000 genomes]
rs9917147	1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231500800-231507000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:231501200-231502400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:231501200-231502600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:231501400-231502400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:231501400-231502400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr2:231502000-231506600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr2:231502000-231506800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:231502000-231507200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:231502000-231507600	Weak transcription	Primary B cells from cord blood	blood
10	chr2:231502200-231503600	Enhancers	GM12878-XiMat	blood
11	chr2:231502200-231504600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:231502200-231506800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:231502200-231506800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr2:231502200-231506800	Weak transcription	Primary T helper cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links