Variant report

Variant	rs10805133
Chromosome Location	chr4:45035906-45035907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11731513	0.88[ASN][1000 genomes]
rs12696797	0.86[ASN][1000 genomes]
rs13113218	0.80[ASN][1000 genomes]
rs13142131	0.83[ASN][1000 genomes]
rs13143285	0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs13144044	0.88[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2089913	0.88[ASN][1000 genomes]
rs2102594	0.88[ASN][1000 genomes]
rs34122438	0.85[ASN][1000 genomes]
rs35598227	0.86[ASN][1000 genomes]
rs4264866	0.88[ASN][1000 genomes]
rs4267771	0.88[ASN][1000 genomes]
rs4299626	0.88[ASN][1000 genomes]
rs4397030	0.87[ASN][1000 genomes]
rs4406052	0.84[ASN][1000 genomes]
rs4488965	0.87[ASN][1000 genomes]
rs4623046	0.88[ASN][1000 genomes]
rs6820099	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv432596	chr4:44951672-45037672	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878983	chr4:44982938-45039597	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3394836	chr4:45033195-45036093	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3365192	chr4:45033645-45035943	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45032200-45038400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:45032400-45038600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:45035000-45036000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:45035800-45036200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:45035800-45036200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:45035800-45036200	Flanking Active TSS	Fetal Heart	heart
7	chr4:45035800-45036400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:45035800-45036400	Enhancers	Fetal Kidney	kidney
9	chr4:45035800-45036600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:45035800-45037400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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