Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10805133	0.86[ASN][1000 genomes]
rs11731513	0.98[ASN][1000 genomes]
rs12696797	0.95[ASN][1000 genomes]
rs13113218	0.93[ASN][1000 genomes]
rs13113771	0.81[ASN][1000 genomes]
rs13142131	0.96[ASN][1000 genomes]
rs13143285	0.98[ASN][1000 genomes]
rs13143617	0.80[ASN][1000 genomes]
rs13144044	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1849338	0.93[EUR][1000 genomes]
rs2089913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2102594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34122438	0.98[ASN][1000 genomes]
rs34177611	0.81[ASN][1000 genomes]
rs35598227	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037996	0.86[ASN][1000 genomes]
rs4264866	0.98[ASN][1000 genomes]
rs4267771	0.98[ASN][1000 genomes]
rs4299626	0.98[ASN][1000 genomes]
rs4397030	0.97[ASN][1000 genomes]
rs4406052	0.94[ASN][1000 genomes]
rs4466077	0.80[ASN][1000 genomes]
rs4488965	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4623046	0.98[ASN][1000 genomes]
rs4974509	0.81[ASN][1000 genomes]
rs7659184	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv980502	chr4:45065237-45077593	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45066000-45080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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