Variant report
Variant | rs10806337 |
---|---|
Chromosome Location | chr6:86474249-86474250 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:2 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000203875 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10944136 | 0.96[EUR][1000 genomes] |
rs10944137 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10944138 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10944144 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10944145 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10944147 | 0.85[ASN][1000 genomes] |
rs10944151 | 0.83[ASN][1000 genomes] |
rs10944152 | 0.83[ASN][1000 genomes] |
rs11754330 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11755642 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11758508 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12153887 | 0.82[EUR][1000 genomes] |
rs12190603 | 0.99[EUR][1000 genomes] |
rs12191212 | 0.85[ASN][1000 genomes] |
rs12192546 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12193904 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12196377 | 0.83[ASN][1000 genomes] |
rs12198557 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12198730 | 0.83[ASN][1000 genomes] |
rs12199329 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12205492 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12211216 | 0.81[EUR][1000 genomes] |
rs12212151 | 0.86[EUR][1000 genomes] |
rs12212480 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12665516 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12665542 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs13201730 | 0.83[ASN][1000 genomes] |
rs13203309 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13203560 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13207173 | 0.97[EUR][1000 genomes] |
rs13219504 | 0.83[ASN][1000 genomes] |
rs1335442 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1447160 | 0.81[EUR][1000 genomes] |
rs1470531 | 0.91[EUR][1000 genomes] |
rs1813001 | 0.82[EUR][1000 genomes] |
rs2084296 | 0.82[EUR][1000 genomes] |
rs2084297 | 0.81[EUR][1000 genomes] |
rs2100109 | 0.82[EUR][1000 genomes] |
rs2121594 | 0.81[ASN][1000 genomes] |
rs2166665 | 0.82[EUR][1000 genomes] |
rs2197648 | 0.82[EUR][1000 genomes] |
rs2218594 | 0.82[EUR][1000 genomes] |
rs2225754 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2324817 | 0.97[EUR][1000 genomes] |
rs34622605 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs34765423 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34795473 | 0.97[EUR][1000 genomes] |
rs36053156 | 0.81[ASN][1000 genomes] |
rs4098044 | 0.97[EUR][1000 genomes] |
rs4706248 | 0.81[EUR][1000 genomes] |
rs4707223 | 0.91[EUR][1000 genomes] |
rs4707229 | 0.82[EUR][1000 genomes] |
rs6454487 | 0.97[EUR][1000 genomes] |
rs6454488 | 0.97[EUR][1000 genomes] |
rs66807489 | 0.94[EUR][1000 genomes] |
rs67024565 | 0.83[ASN][1000 genomes] |
rs6900436 | 0.92[EUR][1000 genomes] |
rs72907388 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9647601 | 0.97[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1028293 | chr6:86353958-86778912 | Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
2 | nsv538350 | chr6:86353958-86778912 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
3 | nsv886335 | chr6:86445651-86669361 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv1022618 | chr6:86465365-87432069 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
5 | nsv538352 | chr6:86465365-87432069 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
6 | esv2189609 | chr6:86474249-86474251 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs10806337 | SNHG5 | cis | lung | GTEx |
rs10806337 | SNHG5 | cis | Esophagus Muscularis | GTEx |
rs10806337 | SNHG5 | Cis_1M | lymphoblastoid | RTeQTL |
rs10806337 | SNHG5 | cis | Artery Tibial | GTEx |
rs10806337 | SNHG5 | cis | Thyroid | GTEx |
rs10806337 | SNHG5 | cis | Esophagus Mucosa | GTEx |
rs10806337 | SNHG5 | cis | Muscle Skeletal | GTEx |
rs10806337 | SNHG5 | cis | Adipose Subcutaneous | GTEx |
rs10806337 | SNHG5 | cis | multi-tissue | Pritchard |
rs10806337 | SNHG5 | cis | Heart Left Ventricle | GTEx |
rs10806337 | SNHG5 | cis | Skin Sun Exposed Lower leg | GTEx |
rs10806337 | SNHG5 | cis | Nerve Tibial | GTEx |
rs10806337 | SNHG5 | cis | Whole Blood | GTEx |
rs10806337 | SNHG5 | cis | Artery Aorta | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:86473800-86475600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
2 | chr6:86474000-86475200 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
3 | chr6:86474200-86475800 | Enhancers | Ovary | ovary |