Variant report

Variant	rs10807059
Chromosome Location	chr6:11208357-11208358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11206545..11209352-chr6:11211717..11213636,2	K562	blood:
2	chr6:11206157..11210739-chr6:11227507..11231085,4	MCF-7	breast:
3	chr6:11172182..11173725-chr6:11207224..11208929,2	MCF-7	breast:
4	chr6:11207669..11210620-chr6:11314180..11315786,2	MCF-7	breast:
5	chr6:11206149..11208479-chr6:11352023..11353648,2	MCF-7	breast:
6	chr6:11207813..11209948-chr6:11232390..11234688,3	MCF-7	breast:
7	chr6:11197493..11200396-chr6:11205565..11209405,4	MCF-7	breast:
8	chr6:11199052..11200788-chr6:11207235..11209981,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction
ENSG00000247925	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10947017	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947020	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947021	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947036	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10947037	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12190771	0.83[EUR][1000 genomes]
rs12190858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200095	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12205037	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215094	0.90[EUR][1000 genomes]
rs12215491	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2034	0.90[EUR][1000 genomes]
rs2327332	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3102	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734405	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3756966	0.90[EUR][1000 genomes]
rs3778169	0.90[EUR][1000 genomes]
rs3778170	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778171	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798733	0.90[EUR][1000 genomes]
rs3798734	0.90[EUR][1000 genomes]
rs3798736	0.90[EUR][1000 genomes]
rs3798737	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798738	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798743	0.90[EUR][1000 genomes]
rs3823016	1.00[ASN][1000 genomes]
rs6912916	0.91[EUR][1000 genomes]
rs6937575	0.90[EUR][1000 genomes]
rs726230	0.87[EUR][1000 genomes]
rs9295813	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11197000-11211000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:11197000-11211200	Genic enhancers	HepG2	liver
3	chr6:11199400-11212600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:11201000-11208600	Genic enhancers	Fetal Thymus	thymus
5	chr6:11201600-11209600	Weak transcription	Fetal Brain Female	brain
6	chr6:11201600-11211000	Weak transcription	Gastric	stomach
7	chr6:11201800-11213000	Weak transcription	Esophagus	oesophagus
8	chr6:11203400-11209800	Weak transcription	Spleen	Spleen
9	chr6:11203600-11208400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:11203800-11209000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:11203800-11210200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:11203800-11213200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:11203800-11213400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:11204000-11208600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:11204000-11208600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:11204000-11208800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:11204000-11209600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:11204000-11209800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:11204000-11210600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:11204000-11211000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:11204200-11208800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:11204200-11209600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:11204200-11209800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:11204200-11210000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:11204200-11211000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:11204200-11213600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:11204200-11213800	Weak transcription	Brain Substantia Nigra	brain
28	chr6:11204200-11222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:11204400-11208800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:11204600-11208600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:11204800-11210800	Enhancers	Fetal Heart	heart
32	chr6:11205200-11215400	Genic enhancers	NH-A	brain
33	chr6:11205200-11217800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:11205400-11209600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:11205600-11208400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:11205800-11209400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:11206200-11208400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:11206200-11208800	Enhancers	Fetal Intestine Small	intestine
39	chr6:11206200-11209800	Enhancers	NHLF	lung
40	chr6:11206200-11210200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:11206400-11208400	Enhancers	Adipose Nuclei	Adipose
42	chr6:11206400-11210400	Weak transcription	Right Ventricle	heart
43	chr6:11206400-11216600	Enhancers	Fetal Muscle Leg	muscle
44	chr6:11206600-11208400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:11206600-11208400	Enhancers	Placenta	Placenta
46	chr6:11206600-11210800	Enhancers	HMEC	breast
47	chr6:11206600-11211600	Genic enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:11206600-11214600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr6:11206600-11214800	Genic enhancers	Osteobl	bone
50	chr6:11206800-11208600	Strong transcription	Primary T cells fromperipheralblood	blood

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