Variant report

Variant	rs3823016
Chromosome Location	chr6:11211099-11211100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11211001..11214077-chr6:11215727..11219130,4	K562	blood:
2	chr6:11210641..11214378-chr6:11216495..11219035,4	MCF-7	breast:
3	chr6:11209766..11214077-chr6:11214391..11221251,7	K562	blood:
4	chr6:11206718..11208239-chr6:11210630..11212261,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10807059	1.00[ASN][1000 genomes]
rs10947017	1.00[ASN][1000 genomes]
rs10947020	1.00[ASN][1000 genomes]
rs10947021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10947026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12190771	1.00[CHB][hapmap]
rs12190858	1.00[ASN][1000 genomes]
rs12205037	1.00[ASN][1000 genomes]
rs12215491	1.00[CHB][hapmap]
rs17496632	1.00[JPT][hapmap]
rs2327332	1.00[CHB][hapmap]
rs3102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778170	1.00[ASN][1000 genomes]
rs3778171	1.00[ASN][1000 genomes]
rs3798737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3798738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11197000-11211200	Genic enhancers	HepG2	liver
2	chr6:11199400-11212600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:11201800-11213000	Weak transcription	Esophagus	oesophagus
4	chr6:11203800-11213200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:11203800-11213400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:11204200-11213600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:11204200-11213800	Weak transcription	Brain Substantia Nigra	brain
8	chr6:11204200-11222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:11205200-11215400	Genic enhancers	NH-A	brain
10	chr6:11205200-11217800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:11206400-11216600	Enhancers	Fetal Muscle Leg	muscle
12	chr6:11206600-11211600	Genic enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:11206600-11214600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:11206600-11214800	Genic enhancers	Osteobl	bone
15	chr6:11206800-11212200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:11207200-11218600	Strong transcription	Primary B cells from cord blood	blood
17	chr6:11207400-11213800	Enhancers	Fetal Brain Male	brain
18	chr6:11207600-11216800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:11207800-11212400	Weak transcription	Liver	Liver
20	chr6:11207800-11213000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:11207800-11216000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:11207800-11218200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:11208000-11211600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:11208000-11212600	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:11208000-11216200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:11208000-11216400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:11208000-11217200	Strong transcription	GM12878-XiMat	blood
28	chr6:11208200-11218600	Genic enhancers	HUVEC	blood vessel
29	chr6:11208400-11213600	Genic enhancers	Adipose Nuclei	Adipose
30	chr6:11208400-11214600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:11208600-11211600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:11208600-11212000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:11208600-11218200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:11208800-11212000	Enhancers	Fetal Lung	lung
35	chr6:11208800-11212600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:11208800-11213000	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:11208800-11213200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr6:11208800-11213400	Genic enhancers	NHDF-Ad	bronchial
39	chr6:11209000-11211200	Weak transcription	HSMMtube	muscle
40	chr6:11209000-11212000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:11209400-11212000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:11209400-11213600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:11209400-11217200	Genic enhancers	Placenta Amnion	Placenta Amnion
44	chr6:11209600-11211200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr6:11209600-11211200	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr6:11209600-11211600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:11209600-11211800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:11209600-11212000	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr6:11209600-11214000	Genic enhancers	Primary T cells from cord blood	blood
50	chr6:11209600-11214400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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