Variant report

Variant	rs10808175
Chromosome Location	chr7:78637345-78637346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1006818	0.95[EUR][1000 genomes]
rs10215372	0.95[EUR][1000 genomes]
rs10236354	0.95[EUR][1000 genomes]
rs10269689	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12113491	0.93[EUR][1000 genomes]
rs12534480	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12536843	0.95[EUR][1000 genomes]
rs12537793	0.85[ASN][1000 genomes]
rs12538053	0.95[EUR][1000 genomes]
rs12669763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705911	0.95[EUR][1000 genomes]
rs1476106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2006635	0.95[EUR][1000 genomes]
rs2109713	0.95[EUR][1000 genomes]
rs2191724	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2280608	0.95[EUR][1000 genomes]
rs34086589	0.95[EUR][1000 genomes]
rs4730596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730599	0.95[EUR][1000 genomes]
rs4730601	0.95[EUR][1000 genomes]
rs6466468	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466471	0.93[EUR][1000 genomes]
rs727652	0.95[EUR][1000 genomes]
rs763593	0.83[ASN][1000 genomes]
rs7779315	0.94[EUR][1000 genomes]
rs7781812	0.94[EUR][1000 genomes]
rs7789063	0.94[EUR][1000 genomes]
rs7793390	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7797398	0.95[EUR][1000 genomes]
rs7799032	0.95[EUR][1000 genomes]
rs7805367	0.95[EUR][1000 genomes]
rs7807319	0.94[EUR][1000 genomes]
rs7809089	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9656215	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv521257	chr7:78632489-78662425	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78624000-78637600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:78632600-78648800	Weak transcription	Aorta	Aorta
3	chr7:78636000-78638000	Weak transcription	Brain Cingulate Gyrus	brain

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