Variant report

Variant	rs10215372
Chromosome Location	chr7:78638086-78638087
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:78637940-78638090	AG09309	skin:	n/a	n/a
2	MAFK	chr7:78638070-78638351	HepG2	liver:	n/a	chr7:78638238-78638253 chr7:78638196-78638210 chr7:78638197-78638208 chr7:78638193-78638208 chr7:78638198-78638209 chr7:78638193-78638209 chr7:78638198-78638209

Variant related genes	Relation type
MAGI2-AS2	TF binding region

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1006818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10226001	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10236354	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10269689	0.89[EUR][1000 genomes]
rs10808175	0.95[EUR][1000 genomes]
rs11769552	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12113491	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12534480	0.88[EUR][1000 genomes]
rs12536821	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12536843	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538053	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12669763	0.95[EUR][1000 genomes]
rs12705911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1476106	0.95[EUR][1000 genomes]
rs2006635	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2079955	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2079956	0.81[ASN][1000 genomes]
rs2098180	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2098181	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2109713	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191724	0.86[EUR][1000 genomes]
rs2191726	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2191727	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2191728	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2280607	0.97[ASN][1000 genomes]
rs2280608	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363930	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2363931	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28572181	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28716458	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34086589	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4727794	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4727796	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4730596	0.95[EUR][1000 genomes]
rs4730597	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4730599	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730601	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4730619	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6466468	0.95[EUR][1000 genomes]
rs6466471	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6466477	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6952133	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs727652	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7779315	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7781812	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789063	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7791770	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7792974	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7793390	0.89[EUR][1000 genomes]
rs7795421	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7797398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805367	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7807319	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7809089	0.90[EUR][1000 genomes]
rs9656215	0.89[EUR][1000 genomes]
rs984312	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv521257	chr7:78632489-78662425	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78632600-78648800	Weak transcription	Aorta	Aorta
2	chr7:78637600-78639000	Enhancers	Brain Hippocampus Middle	brain
3	chr7:78637600-78639200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr7:78637600-78639200	Enhancers	Brain Substantia Nigra	brain
5	chr7:78637600-78639400	Enhancers	Brain Angular Gyrus	brain
6	chr7:78637800-78638400	Enhancers	Brain Anterior Caudate	brain
7	chr7:78638000-78638400	Enhancers	Brain Cingulate Gyrus	brain

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