Variant report
Variant | rs2280607 |
---|---|
Chromosome Location | chr7:78641584-78641585 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PHTF2-3 | chr7:78641400-78641593 | ENSG00000226978.1 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1006818 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs10215372 | 0.97[ASN][1000 genomes] |
rs10224582 | 0.95[CHB][hapmap] |
rs10226001 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs10236354 | 0.92[ASN][1000 genomes] |
rs11769552 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12113491 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12536821 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs12536843 | 0.97[ASN][1000 genomes] |
rs12538053 | 0.96[ASN][1000 genomes] |
rs12539532 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12540352 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs12540925 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs12705911 | 0.93[ASN][1000 genomes] |
rs1558422 | 0.81[AMR][1000 genomes] |
rs17151881 | 0.86[CHB][hapmap] |
rs2006635 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs2079955 | 0.96[ASN][1000 genomes] |
rs2098180 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs2098181 | 0.91[ASN][1000 genomes] |
rs2109713 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs2159687 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs2191726 | 0.96[ASN][1000 genomes] |
rs2191727 | 0.96[ASN][1000 genomes] |
rs2191728 | 0.96[ASN][1000 genomes] |
rs2280608 | 0.97[ASN][1000 genomes] |
rs2363930 | 0.96[ASN][1000 genomes] |
rs2363931 | 0.96[ASN][1000 genomes] |
rs28572181 | 0.91[ASN][1000 genomes] |
rs28716458 | 0.90[ASN][1000 genomes] |
rs34086589 | 0.96[ASN][1000 genomes] |
rs4727794 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs4727796 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs4730597 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs4730599 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs4730601 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs4730619 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs5004248 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs6466471 | 0.94[ASN][1000 genomes] |
rs6466477 | 0.96[ASN][1000 genomes] |
rs6945664 | 1.00[JPT][hapmap] |
rs6952133 | 0.95[ASN][1000 genomes] |
rs6964007 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs727652 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
rs7779315 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7781812 | 0.97[ASN][1000 genomes] |
rs7789063 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7791770 | 0.96[ASN][1000 genomes] |
rs7792974 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7795421 | 0.82[ASN][1000 genomes] |
rs7797398 | 0.97[ASN][1000 genomes] |
rs7799032 | 0.97[ASN][1000 genomes] |
rs7805367 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs7807319 | 0.96[ASN][1000 genomes] |
rs984312 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs985175 | 0.80[CHB][hapmap] |
rs987435 | 0.91[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | nsv482826 | chr7:78548319-78717605 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv471642 | chr7:78548320-78717605 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv831040 | chr7:78623195-78831998 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv521257 | chr7:78632489-78662425 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:78632600-78648800 | Weak transcription | Aorta | Aorta |