Variant report

Variant	rs12540352
Chromosome Location	chr7:78658262-78658263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78656805..78659401-chr7:78662080..78664588,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1006818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10215372	0.88[ASN][1000 genomes]
rs10224582	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs10226001	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10231279	0.88[CEU][hapmap]
rs10236354	0.86[ASN][1000 genomes]
rs10240536	0.83[CEU][hapmap]
rs11769552	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12113491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12536821	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12536843	0.88[ASN][1000 genomes]
rs12538053	0.87[ASN][1000 genomes]
rs12539532	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs12540925	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12705911	0.86[ASN][1000 genomes]
rs2006635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2079955	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2098180	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2098181	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2109713	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2159687	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2191726	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2191727	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2191728	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2191730	0.83[CHB][hapmap]
rs2280607	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2280608	0.88[ASN][1000 genomes]
rs2363930	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2363931	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28572181	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28716458	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34086589	0.88[ASN][1000 genomes]
rs4727794	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4727796	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4730597	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4730599	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4730601	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4730619	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5004248	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6466471	0.88[ASN][1000 genomes]
rs6466477	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6945664	1.00[JPT][hapmap]
rs6952133	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6964007	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs727652	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs763593	0.80[CEU][hapmap]
rs7779315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7781812	0.88[ASN][1000 genomes]
rs7789063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7791770	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7792974	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7797398	0.88[ASN][1000 genomes]
rs7799032	0.88[ASN][1000 genomes]
rs7805367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7807319	0.88[ASN][1000 genomes]
rs9691529	0.81[CEU][hapmap]
rs984312	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs985175	0.83[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv521257	chr7:78632489-78662425	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv607660	chr7:78644077-78666050	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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