Variant report

Variant	rs10231279
Chromosome Location	chr7:78676614-78676615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10224582	1.00[CEU][hapmap]
rs10224972	0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs10226001	0.91[CEU][hapmap];0.82[TSI][hapmap]
rs10240536	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs10269689	0.85[CHD][hapmap]
rs10485926	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12534480	0.85[CHD][hapmap]
rs12536821	0.91[CEU][hapmap]
rs12537793	0.82[CEU][hapmap];0.85[CHD][hapmap]
rs12539532	0.91[CEU][hapmap];0.82[TSI][hapmap]
rs12540352	0.88[CEU][hapmap]
rs12540925	0.87[CEU][hapmap]
rs13229394	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs13438061	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs13438576	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs1476106	0.84[CHB][hapmap];0.92[CHD][hapmap]
rs2098180	0.91[CEU][hapmap]
rs2159687	0.91[CEU][hapmap]
rs2191724	0.85[CHD][hapmap]
rs2215546	0.85[CHD][hapmap]
rs4437570	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4727794	0.86[CEU][hapmap]
rs4727796	0.91[CEU][hapmap]
rs4730596	0.84[CHB][hapmap];0.92[CHD][hapmap]
rs4730597	0.91[CEU][hapmap]
rs4730619	0.91[CEU][hapmap]
rs5004248	0.91[CEU][hapmap]
rs6466468	0.84[CHB][hapmap]
rs6946707	0.87[TSI][hapmap]
rs6954088	0.82[CEU][hapmap]
rs6958348	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6962482	0.86[CEU][hapmap]
rs6964007	0.91[CEU][hapmap]
rs6978423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs763593	0.82[CEU][hapmap]
rs7778014	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7792974	0.91[CEU][hapmap]
rs7809089	0.85[CHD][hapmap]
rs9691529	0.83[CEU][hapmap]
rs984312	0.91[CEU][hapmap]
rs985175	0.87[CEU][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10231279	MDH2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links