Variant report

Variant	rs10240536
Chromosome Location	chr7:78662425-78662426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78656805..78659401-chr7:78662080..78664588,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10224582	0.95[CEU][hapmap];0.81[YRI][hapmap]
rs10224972	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs10226001	0.91[CEU][hapmap];0.82[GIH][hapmap];0.84[TSI][hapmap]
rs10231279	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs10259881	0.83[CHB][hapmap]
rs10269689	0.83[CHB][hapmap]
rs10485926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534480	0.83[CHB][hapmap]
rs12536821	0.91[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap]
rs12537793	0.82[CEU][hapmap];0.83[CHB][hapmap];0.80[GIH][hapmap]
rs12539532	0.91[CEU][hapmap];0.82[GIH][hapmap];0.84[TSI][hapmap]
rs12540352	0.83[CEU][hapmap]
rs12540925	0.87[CEU][hapmap]
rs13229394	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13438061	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13438576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1476106	0.92[CHB][hapmap];0.84[CHD][hapmap]
rs2098180	0.91[CEU][hapmap]
rs2159687	0.91[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs2191724	0.82[CHB][hapmap]
rs2215546	0.83[CHB][hapmap]
rs2215547	0.82[CHB][hapmap]
rs4437570	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs4727794	0.86[CEU][hapmap]
rs4727796	0.91[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs4730596	0.92[CHB][hapmap];0.85[CHD][hapmap]
rs4730597	0.91[CEU][hapmap]
rs4730619	0.91[CEU][hapmap]
rs5004248	0.91[CEU][hapmap]
rs6466468	0.92[CHB][hapmap]
rs6962482	0.85[CEU][hapmap]
rs6964007	0.90[CEU][hapmap]
rs6978423	0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs763593	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs7778014	0.81[EUR][1000 genomes]
rs7792974	0.91[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap]
rs7793390	0.83[CHB][hapmap]
rs7809089	0.83[CHB][hapmap]
rs9691529	0.88[CEU][hapmap]
rs9692247	0.83[CEU][hapmap]
rs984312	0.91[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap]
rs985175	0.91[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv521257	chr7:78632489-78662425	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv607660	chr7:78644077-78666050	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10240536	MDH2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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