Variant report

Variant	rs6946707
Chromosome Location	chr7:78679486-78679487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10224582	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs10226001	0.80[CHD][hapmap]
rs10231279	0.87[TSI][hapmap]
rs12539532	0.80[CHD][hapmap]
rs17151881	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2191730	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4437570	0.92[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs4727796	0.80[CHD][hapmap]
rs4730599	0.82[CHD][hapmap]
rs6954088	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs6958348	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6962482	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs6978423	0.88[CEU][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7778014	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs985175	0.85[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78677800-78683800	Weak transcription	Fetal Kidney	kidney
2	chr7:78679400-78679800	Enhancers	Brain Angular Gyrus	brain
3	chr7:78679400-78679800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr7:78679400-78680200	Enhancers	Brain Anterior Caudate	brain
5	chr7:78679400-78680200	Enhancers	Brain Germinal Matrix	brain
6	chr7:78679400-78680800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:78679400-78680800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:78679400-78680800	Enhancers	Brain Substantia Nigra	brain
9	chr7:78679400-78680800	Enhancers	HMEC	breast
10	chr7:78679400-78681600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:78679400-78681800	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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