Variant report

Variant	rs17151881
Chromosome Location	chr7:78663513-78663514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78656805..78659401-chr7:78662080..78664588,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1006818	0.84[CHB][hapmap]
rs10224582	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10226001	0.80[CHB][hapmap]
rs11769552	0.80[CHB][hapmap]
rs12113491	0.80[CHB][hapmap]
rs12536821	0.85[CHB][hapmap]
rs12539532	0.85[CHB][hapmap]
rs12540925	0.81[CHB][hapmap]
rs2098180	0.81[CHB][hapmap]
rs2109713	0.85[CHB][hapmap]
rs2191730	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2280607	0.86[CHB][hapmap]
rs4727794	0.85[CHB][hapmap]
rs4727796	0.80[CHB][hapmap]
rs4730597	0.86[CHB][hapmap]
rs4730599	0.85[CHB][hapmap]
rs4730601	0.80[CHB][hapmap]
rs4730619	0.86[CHB][hapmap]
rs5004248	0.81[CHB][hapmap]
rs6946707	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs6954088	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6962482	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6964007	0.85[CHB][hapmap]
rs727652	0.81[CHB][hapmap]
rs7779315	0.81[CHB][hapmap]
rs7789063	0.81[CHB][hapmap]
rs7792974	0.80[CHB][hapmap]
rs7805367	0.80[CHB][hapmap]
rs984312	0.85[CHB][hapmap]
rs985175	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv607660	chr7:78644077-78666050	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links