Variant report

Variant	rs7795421
Chromosome Location	chr7:78641200-78641201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1006818	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10215372	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10236354	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11769552	0.82[ASN][1000 genomes]
rs12113491	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12536821	0.84[ASN][1000 genomes]
rs12536843	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538053	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12705911	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2006635	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2079955	0.82[ASN][1000 genomes]
rs2079956	0.81[ASN][1000 genomes]
rs2098180	0.82[ASN][1000 genomes]
rs2109713	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2191726	0.82[ASN][1000 genomes]
rs2191727	0.82[ASN][1000 genomes]
rs2191728	0.82[ASN][1000 genomes]
rs2280607	0.82[ASN][1000 genomes]
rs2280608	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2363930	0.82[ASN][1000 genomes]
rs2363931	0.82[ASN][1000 genomes]
rs34086589	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4727794	0.82[ASN][1000 genomes]
rs4730597	0.80[ASN][1000 genomes]
rs4730599	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4730601	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730619	0.82[ASN][1000 genomes]
rs6466471	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6466477	0.82[ASN][1000 genomes]
rs6952133	0.81[ASN][1000 genomes]
rs727652	0.84[EUR][1000 genomes]
rs7779315	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7781812	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7789063	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7791770	0.82[ASN][1000 genomes]
rs7792974	0.82[ASN][1000 genomes]
rs7797398	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7799032	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7805367	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7807319	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs984312	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv521257	chr7:78632489-78662425	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78632600-78648800	Weak transcription	Aorta	Aorta

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