Variant report

Variant	rs10808389
Chromosome Location	chr8:105374981-105374982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12543989	0.80[ASN][1000 genomes]
rs1317417	0.89[ASN][1000 genomes]
rs1355692	0.80[ASN][1000 genomes]
rs2334119	0.89[ASN][1000 genomes]
rs2458428	0.81[ASN][1000 genomes]
rs2458429	0.80[ASN][1000 genomes]
rs2514674	0.81[ASN][1000 genomes]
rs2514675	0.81[ASN][1000 genomes]
rs2669440	0.80[ASN][1000 genomes]
rs2669442	0.91[ASN][1000 genomes]
rs2669443	0.91[ASN][1000 genomes]
rs2853134	0.84[ASN][1000 genomes]
rs2853135	0.84[ASN][1000 genomes]
rs2853136	0.84[ASN][1000 genomes]
rs2853138	0.81[ASN][1000 genomes]
rs2853139	0.81[ASN][1000 genomes]
rs2853140	0.81[ASN][1000 genomes]
rs2853142	0.80[ASN][1000 genomes]
rs2853166	0.91[ASN][1000 genomes]
rs2853177	0.89[ASN][1000 genomes]
rs4734788	0.81[ASN][1000 genomes]
rs4734789	0.81[ASN][1000 genomes]
rs4734790	0.81[ASN][1000 genomes]
rs4734791	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105366400-105378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:105372000-105375000	Enhancers	NHDF-Ad	bronchial
3	chr8:105372000-105375200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:105373000-105375000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:105373000-105375400	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:105373600-105375000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:105374000-105375000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:105374000-105375000	Enhancers	NH-A	brain
9	chr8:105374000-105375000	Enhancers	Osteobl	bone
10	chr8:105374000-105378800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:105374000-105379000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:105374200-105375000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:105374200-105375000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
14	chr8:105374200-105375600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:105374200-105379000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:105374600-105375000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr8:105374600-105375000	Enhancers	Brain Cingulate Gyrus	brain
18	chr8:105374600-105375200	Enhancers	Fetal Lung	lung
19	chr8:105374600-105375400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:105374600-105378600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:105374600-105378800	Weak transcription	HUVEC	blood vessel
22	chr8:105374800-105375000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:105374800-105375000	Enhancers	NHLF	lung
24	chr8:105374800-105376000	Enhancers	K562	blood
25	chr8:105374800-105378200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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